PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g100140.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 451aa    MW: 49418.1 Da    PI: 5.1787
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g100140.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.7e-11387432655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+el+P+     +k  + a++L  A +YIk+L+
  Solyc12g100140.1.1 387 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDFAADYIKELE 432
                         689*********************7....688***************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.5381431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-15384444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.43E-11385436No hitNo description
Gene3DG3DSA:4.10.280.105.3E-14386442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-12387437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-8387432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MEEKSMDHRS HQQQQMTSGL TRYRSAPSSY FTNLLSSNNP AGVSGGSGNC GYARDDFDQL  60
LNPHASNSGI KQVFDRFVAN IGPQDSNPDG LIDDTQQNQN PMSNMDVRSE VLAPMKQEHE  120
AQMNYQCQEQ QSQNSQFVAP VKQEIAQQNS DYSLASQMNY QNHNATDFTS GMDNFGRYNR  180
LNHTKMDGGF GTGSSDSNLT RYNSSPAGFF ALVNIENEYG ALRGIGSYGA GSGTNAAGEV  240
SFSNPSRFSS QTALPSGQPT SSGLLAPISE FGAKSIEESR RGHESFGKGH KSDESYMAGF  300
ALPSWDDSQI LTDDFLQVPE DDESGSFSNV NASDNQSSEG RARPPTLLSH LSLPQTSAEL  360
SAMEKLLQDS VPCKVRAKRG CATHPRSIAE RVRRTRISER MRKLQELVPN MDKQTNTADM  420
LDFAADYIKE LETQVKALSE TRSKCTCLHE *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.169701e-71flower| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2127920.0Solanum lycopersicum DNA sequence from clone LE_HBa-224N6 on chromosome 12, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010314674.10.0PREDICTED: transcription factor bHLH130-like
TrEMBLK4DI350.0K4DI35_SOLLC; Uncharacterized protein
STRINGSolyc12g100140.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.17e-57bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]